Convert Seurat to a adata — seurat_to

This function reads a h5ad file, extracts metadata, gene and cell names, and count data. Then, it creates a Seurat object with the extracted information.

Usage

seurat_to_adata(seurat_obj, assay = "RNA")

Arguments

seurat_obj: A `Seurat` object
counts_assay: name of assay containing counts information. Defaults to first assay found.

Value

A converted adata object

Details

Note that this version doesn't import unstructured data saved in `uns`.