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Returns feature names of `deconverse` results that are stored in the Seurat object
deconverse_results.Rd
Returns feature names of `deconverse` results that are stored in the Seurat object
Usage
# S3 method for Seurat
deconverse_results(
spatial_obj,
method = NULL,
major_population = FALSE,
raw_results = FALSE
)
# S3 method for scbench
deconverse_results(scbench, tidy = FALSE, ...)
Arguments
- spatial_obj
a Seurat object with a "Spatial" assay
- method
a string, corresponding to the method of deconvolution. Must be one of `deconvolution_methods()`. If NULL, all available deconvolution features are returned.
- major_population
if TRUE, the method returns a categorical feature with the most abundant population predicted for each spot.
- raw_results
if TRUE, returns deconverse results as stored in the object instead of feature names. Also available on `spatial_obj@tools$deconverse`