Compute reference signature matrix from `screference` object using method implemented in CIBERSORTx — cibersortx_scref • deconverse

Compute reference signature matrix from `screference` object using method implemented in CIBERSORTx

Usage

cibersortx_scref(
  scref,
  cache_path = "cibersortx",
  username = NULL,
  token = NULL
)

Arguments

scref: an object of `screference
cache_path: path to cache results
username: a username used to authenticate access to CIBERSORTx method. See: https://cibersortx.stanford.edu/getoken.php
token: a token used to authenticate access to CIBERSORTx method

Value

a path to cached signature matrix