Convert adata to a Seurat object

This function reads a h5ad file, extracts metadata, gene and cell names, and count data. Then, it creates a Seurat object with the extracted information.

Usage

adata_to_seurat(adata, counts_layer, ...)

Arguments

adata

An `anndata` python object

counts_layer

layer of adata containing counts information

Value

A converted Seurat object

Details

Note that this version doesn't import unstructured data saved in `uns`.