scycle - scycle - Cell cycle analysis in single-cell RNA-seq

scycle uses the scanpy and anndata frameworks in Python and extends their functionality to calculate cell-cycle pseudotimes and assigns cell cycle phase for each cell in a dataset.

Installation

To install, use pip:

pip install git+https://github.com/csgroen/scycle.git#egg=scycle

Warning: This package is still in a pre-release state: we regularly update the source code, and inconsistencies can occur. Please do not hesitate to open an issue to notify us about any suprising behavior by opening an issue on Github.